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Longhi, G., S. Petraro, C. Milani, et al. 2025. “ Genetic Characterisation of the upp Gene in Bifidobacterium bifidum PRL2010.” Microbial Biotechnology 18, no. 7: e7018
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Ablation of polysaccharide breakdown in Bacteroides thetaiotaomicron prevents cross-feeding and growth of Salmonella Typhimurium in the mouse gut Lena Amend, Anja Stock, Marie Wende, Lisa Osbelt-Block, Gesa Martens, Meina Neumann-Schaal, Till Strowig, Alexander J. Westermann bioRxiv 2025.08.08
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Human milk oligosaccharide metabolism by Clostridium species suppresses inflammation and pathogen growth
Jonathan A. Chapman, Andrea C. Masi, Lauren C. Beck, Hannah Watson, Gregory R. Young, Hilary P. Browne, Yan Shao, Raymond Kiu, Andrew Nelson, Jennifer A. Doyle, Pawel Palmowski, Márton Lengyel, James P. R. Connolly, Christopher A. Lamb, Andrew Porter, Trevor D. Lawley, Lindsay J. Hall, Nicholas D. Embleton, John D. Perry, Janet E. Berrington, Christopher J. Stewart bioRxiv 2025.01.21
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Siguenza N, Bailey S, Sadegi M, Gootin H, Tiu M, Price JD, Ramer-Tait A, Zarrinpar A. Gut Competition Dynamics of Live Bacterial Therapeutics Are Shaped by Microbiome Complexity, Diet, and Therapeutic Transgenes. bioRxiv [Preprint]. 2025 Jan 21:2025.01.21.634159.
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Evolutionary plasticity of bacterial surface layer protein exoskeletons Anna Barwinska-Sendra, Paula S. Salgado, Kacper M. Sendra bioRxiv 2025.04.02
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Coleman, O.I., Sorbie, A., Riva, A. et al. ATF6 activation alters colonic lipid metabolism causing tumour-associated microbial adaptation. Nat Metab (2025).
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Deciphering the RNA-based regulation mechanism of the phage-encoded AbiF system in Clostridioides difficile Saunier M, Humbert A, Kreis V, Peltier J, Tisba A, et al. (2025) Deciphering the RNA-based regulation mechanism of the phage-encoded AbiF system in Clostridioides difficile. PLOS Genetics 21(8): e1011831
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Reprogramming the EnvZ-OmpR two-component system confers ethanol tolerance in Escherichia coli by stabilizing the outer membrane and altering iron homeostasis Thomas Schalck, Sarah De Graeve, Lars Roba, Julia Victor Baldoma, Toon Swings, Bram Van den Bergh, Jan Michiels bioRxiv 2025.05.01.
Go to abstractMaik Kok, Wisse van Os, Thomas Hankemeier, J G Coen van Hasselt, Prolonged anoxic exposure impacts antibiotic sensitivity profiles of Pseudomonas aeruginosa, FEMS Microbiology Letters, Volume 372, 2025
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Chlamydia trachomatis restricts signaling through NOD2 until late in the pathogen’s developmental cycle Grace Overman, Iris Loeckener, Zachary Williford, Sung Davis, Aissata Diallo, Beate Henrichfreise, George W. Liechti bioRxiv 2025.05.28.
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Hashimoto, R., Nishiyama, K., Namai, F. et al. Milk sialyl-oligosaccharides mediate the early colonization of gut commensal microbes in piglets. Microbiome 13, 135 (2025)
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Targeting SleC and CspB in the Inhibition of Spore Germination in Clostridioides difficile Jingdong Yang, Yuanyuan Qian, Choon Kim, Biruk T. Birhanu, Carlos Cal y Mayor-Luna, Derong Ding, Xiaotan Yu, Valerie A. Schroeder, Shahriar Mobashery, and Mayland Chang Journal of Medicinal Chemistry 2025 68 (9), 9357-9370
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Designing synthetic microbial communities with the capacity to upcycle fermentation byproducts to increase production yields Rafieenia, Razieh et al. Trends in Biotechnology, Volume 43, Issue 3, 601 - 619
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Comparative Analysis of Indole Derivative Production Among Clinical Isolates of Fusobacterium nucleatum Colin Scano, Ankan Choudhury, Macarena G. Rojo, Ramon Lavado, Greg Zaharas, Jessalyn Hawkins, Leigh Greathouse bioRxiv 2025
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de Farias, F.M., Soria, M.C., O’Connor, P.M. et al. Leuconostoc lactis strain APC 3969 produces a new variant of cyclic bacteriocin leucocyclicin Q and displays potent anti-Clostridium perfringens activity. Sci Rep 15, 6372 (2025)
Go to abstractBeebe MA, Paredes-Sabja D, Kociolek LK, Rodríguez C, Sorg JA.2025.Phenotypic analysis of various Clostridioides difficile ribotypes reveals consistency among core processes. Appl Environ Microbiol91:e00964-25.https://doi.org/10.1128/aem.00964-25
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El-Baz N, Kyser A, Mahmoud MY, Farrell CZ, Ginocchio S, Frieboes HB, Doster RS. 0. Modulation of group B Streptococcus infection and vaginal cell inflammatory signaling in vitro by Lactobacillus crispatus-loaded electrospun fibers. Infect Immun 0:e00170-25.
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Uptake mechanisms and physiological effects of furanic compounds from the Maillard reaction in budding yeast Laise Cedraz Pinto Matos, Amy Milburn, Chris MacDonald bioRxiv 2025
Go to abstract"Emily G. Knox, Paula Sánchez-Díaz, Colin Buttimer, Sarah-Jane Leigh, Klara Vlckova, Colin Hill, Elaine Kennedy, Jonathan O’Regan, Seamus McSweeney, David Goulding, Maria Rodriguez Aburto, Caitriona M. O’Driscoll, John F. Cryan, Eoin Gunnigle, Gerard Clarke,
Bifidobacterium fermentation with infant formulas is associated with benefits for gut and brain barrier function, Journal of Functional Foods, Volume 125, 2025"
Stuut Balsam S, Conaway A, Mould DL, Jean-Pierre F, Hogan DA.2025.Pseudomonas aeruginosa Dnr-regulated denitrification in microoxic conditions. Microbiol Spectr13:e00682-25.
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SimUrine: A Novel, Fully Defined Artificial Urinary Media for Enhanced Microbiological Research of Urinary Bacteria
Pablo Gallardo Molina, Brian I Choi, Michael Vanek, Mohammad Haneef Khan, Marjon de Vos, Alan J. Wolfe
